Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Soft_tissue Site Subtype Fibrous_tissue_and_uncertain_origin
Primary Histology Sarcoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
374 874

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,26:01 07:02,18:01 07:02,07:02 05:02,01:02 None 06:13,06:13 15:01,11:04
RPKM HLA_B rpkm 10.36 ; HLA_C rpkm 68.58 ; HLA_DQA1 rpkm 0.04 ; HLA_DRB1 rpkm 1.96 ; HLA_A rpkm 0.28 ; HLA_DQB1 rpkm 0.08
Note In HLA_B 18:01 , HLA_C 07:02 , HLA_DQA1 05:02 and 01:02 , HLA_DRB1 11:04 , HLA_A 24:02 and 26:01 , HLA_DQB1 06:13. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Soft_tissue Site Subtype Fibrous_tissue_and_uncertain_origin
Primary Histology Sarcoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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