Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Ns
Primary Histology Lymphoid_neoplasm Histology Subtype Mantle_cell_lymphoma
Gender Male, Female Age Not Available
Ethnicity Caucasian Tumour Source Nan, Ns

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
122 143

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
68:01,11:01 39:01,35:01 04:01,12:03 01:02,01:02 None 06:08,05:01 01:01,13:01
RPKM HLA_DQB1 rpkm 35.8 ; HLA_C rpkm 91.81 ; HLA_DQA1 rpkm 47.32 ; HLA_DRB1 rpkm 86.57 ; HLA_A rpkm 59.17 ; HLA_B rpkm 50.13
Note In HLA_DQB1 06:08 , HLA_DRB1 13:01 , HLA_B 39:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Haematopoietic_and_lymphoid_tissue Site Subtype Ns
Primary Histology Lymphoid_neoplasm Histology Subtype Mantle_cell_lymphoma
Gender Male, Female Age Not Available
Ethnicity Caucasian Tumour Source Nan, Ns
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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