Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Small_cell_carcinoma
Gender Female Age Not Available
Ethnicity African_american Tumour Source Metastasis, Pleura

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
680 1553

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
68:02,23:01 53:01,53:01 04:01,06:02 01:02,01:02 None 06:07,06:07 13:01,13:01
RPKM HLA_DRB1 rpkm 0.15 ; HLA_DQB1 rpkm 2.15 ; HLA_A rpkm 73.15 ; HLA_DQA1 rpkm 0.06 ; HLA_B rpkm 75.82 ; HLA_C rpkm 88.23
Note In HLA_DRB1 13:01 , HLA_DQB1 06:07 , HLA_DQA1 01:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Small_cell_carcinoma
Gender Female Age Not Available
Ethnicity African_american Tumour Source Metastasis, Pleura
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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