Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Small_cell_carcinoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Bone_marrow

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
123 138

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
03:01,01:01 58:05,07:02 07:01,07:01 03:02,03:02 None 02:02,02:02 None
RPKM HLA_A rpkm 31.07 ; HLA_C rpkm 12.0 ; HLA_DQA1 rpkm 0.04 ; HLA_DQB1 rpkm 0.04 ; HLA_B rpkm 0.13
Note In HLA_C 07:01 , HLA_DQA1 03:02 , HLA_DQB1 02:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Small_cell_carcinoma
Gender Female Age None
Ethnicity Caucasian Tumour Source Bone_marrow
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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