Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Non_small_cell_carcinoma
Gender Male Age Not Available
Ethnicity Black, African_american Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
914 2358

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
80:01,80:01 50:01,50:01 06:02,06:02 None 19:01,19:01 06:13,06:13 13:27,03:17
RPKM HLA_C rpkm nan ; HLA_DQB1 rpkm nan ; HLA_DQB1 rpkm 0.1 ; HLA_DRB1 rpkm nan ; HLA_A rpkm nan ; HLA_A rpkm 103.86 ; HLA_DPB1 rpkm nan ; HLA_B rpkm 43.13 ; HLA_C rpkm 40.41 ; HLA_B rpkm nan ; HLA_DRB1 rpkm 0.21
Note In HLA_DQB1 06:13 , HLA_DRB1 13:27. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Non_small_cell_carcinoma
Gender Male Age Not Available
Ethnicity Black, African_american Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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