Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Caecum
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Abdominal_wall

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
294 776

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,02:01 08:01,51:01 07:01,14:02 03:02,03:02 None 05:01,05:01 01:01,03:05
RPKM HLA_C rpkm 85.05 ; HLA_DQB1 rpkm 5.1 ; HLA_B rpkm 90.52 ; HLA_A rpkm 110.51 ; HLA_DQA1 rpkm 0.03 ; HLA_DRB1 rpkm 7.19
Note In HLA_C 07:01 , HLA_DQA1 03:02 , HLA_DRB1 03:05. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Caecum
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Abdominal_wall
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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