Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
337 724

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
11:01,11:01 15:18,15:18 07:04,07:04 None None 06:02,03:02 11:04,11:04
RPKM HLA_C rpkm 67.63 ; HLA_B rpkm 8.54 ; HLA_DRB1 rpkm 0.02 ; HLA_A rpkm 51.88 ; HLA_DQB1 rpkm 0.02
Note In HLA_C 07:04 , HLA_B 15:18 , HLA_DRB1 11:04 , HLA_DQB1 06:02 and 03:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Lung Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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