Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Caecum
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Lymph_node

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
229 504

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
26:01,26:01 38:01,38:01 12:03,12:03 03:02,03:02 None None 04:37,14:103
RPKM HLA_DRB1 rpkm 0.24 ; HLA_DQA1 rpkm 0.04 ; HLA_B rpkm 172.48 ; HLA_C rpkm 153.14 ; HLA_A rpkm 193.36
Note In HLA_DQA1 03:02 , HLA_A 26:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Caecum
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Lymph_node
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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