Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Soft_tissue Site Subtype Striated_muscle
Primary Histology Rhabdomyosarcoma Histology Subtype Alveolar
Gender Male Age None
Ethnicity Caucasian Tumour Source Bone_marrow

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
188 227

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
11:01,11:01 35:01,35:01 04:01,04:01 05:02,05:02 None 06:01,06:01 10:04,01:02
RPKM HLA_C rpkm 73.27 ; HLA_B rpkm 75.12 ; HLA_DRB1 rpkm 0.03 ; HLA_DQA1 rpkm 0.05 ; HLA_A rpkm 13.88 ; HLA_DQB1 rpkm 0.03
Note In HLA_DQA1 05:02 , HLA_DQB1 06:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Soft_tissue Site Subtype Striated_muscle
Primary Histology Rhabdomyosarcoma Histology Subtype Alveolar
Gender Male Age None
Ethnicity Caucasian Tumour Source Bone_marrow
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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