Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Unknown, Soft_tissue Site Subtype Unknown, Striated_muscle
Primary Histology Unknown, Rhabdomyosarcoma Histology Subtype Unknown, Alveolar
Gender Unknown, Female Age Not Available
Ethnicity Caucasian Tumour Source Ns, Liver

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
212 425

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
68:01,68:01 40:01,14:02 03:04,01:04 01:02,01:02 None None 10:04,10:04
RPKM HLA_A rpkm 17.94 ; HLA_DQA1 rpkm 0.06 ; HLA_C rpkm 0.78 ; HLA_B rpkm 0.32 ; HLA_DRB1 rpkm 0.03
Note In HLA_DQA1 01:02 , HLA_C 03:04 and 01:04 , HLA_B 40:01 and 14:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Unknown, Soft_tissue Site Subtype Unknown, Striated_muscle
Primary Histology Unknown, Rhabdomyosarcoma Histology Subtype Unknown, Alveolar
Gender Unknown, Female Age Not Available
Ethnicity Caucasian Tumour Source Ns, Liver
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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