Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Ns, Adenocarcinoma
Gender Unknown, Unknown Age Not Available
Ethnicity African_american Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
2309 5802

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
03:01,03:01 18:01,35:08 07:01,07:01 None None None None
RPKM HLA_A rpkm 110.11 ; HLA_B rpkm 12.48 ; HLA_C rpkm 64.45
Note In HLA_B 35:08 , HLA_C 07:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Ns, Adenocarcinoma
Gender Unknown, Unknown Age Not Available
Ethnicity African_american Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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