Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
231 486

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,01:01 08:01,51:01 14:02,07:01 04:01,04:01 None 04:02,04:02 08:01,03:01
RPKM HLA_DQA1 rpkm 0.79 ; HLA_B rpkm 87.49 ; HLA_DQB1 rpkm 6.81 ; HLA_A rpkm 209.67 ; HLA_DRB1 rpkm 1.53 ; HLA_C rpkm 153.31
Note In HLA_DQB1 04:02 , HLA_DRB1 08:01 , HLA_C 07:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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