Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
250 499

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,02:01 44:03,35:03 16:02,04:01 05:02,01:02 None None 13:14,01:16
RPKM HLA_B rpkm 6.97 ; HLA_DQA1 rpkm 0.05 ; HLA_C rpkm 33.31 ; HLA_DRB1 rpkm 0.07 ; HLA_A rpkm 49.93
Note In HLA_B 44:03 , HLA_DQA1 05:02 and 01:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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