Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma, Transitional_cell_carcinoma
Gender Unknown, Male Age Not Available
Ethnicity African_american Tumour Source Ns, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
367 798

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
33:03,02:01 51:01,15:16 16:01,14:02 None None 06:02,03:04 15:03,13:03
RPKM HLA_A rpkm 96.63 ; HLA_DQB1 rpkm 1.77 ; HLA_DRB1 rpkm 1.8 ; HLA_C rpkm 164.77 ; HLA_B rpkm 171.6
Note In HLA_DQB1 03:04 , HLA_DRB1 15:03 and 13:03 , HLA_B 51:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma, Transitional_cell_carcinoma
Gender Unknown, Male Age Not Available
Ethnicity African_american Tumour Source Ns, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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