Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Skin Site Subtype Axilla, Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Axillary_node

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
491 1170

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:01,11:01 40:01,07:02 03:04,07:02 03:02,01:02 None 03:03,06:13 04:01,13:02
RPKM HLA_A rpkm 112.37 ; HLA_B rpkm 29.13 ; HLA_C rpkm 39.28 ; HLA_DQA1 rpkm 1.78 ; HLA_DQB1 rpkm 1.89 ; HLA_DRB1 rpkm 3.58
Note In HLA_A 02:01 , HLA_DQA1 03:02 and 01:02 , HLA_DQB1 03:03 and 06:13 , HLA_DRB1 04:01 and 13:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Skin Site Subtype Axilla, Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Primary, Axillary_node
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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