Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Autonomic_ganglia Site Subtype Ns
Primary Histology Neuroblastoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Bone_marrow

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
300 626

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:03,02:01 51:10,40:01 18:05,01:02 01:02,01:02 None 03:04,03:04 01:02,01:02
RPKM HLA_DQB1 rpkm 0.03 ; HLA_DQA1 rpkm 0.03 ; HLA_C rpkm 0.1 ; HLA_DRB1 rpkm 0.05 ; HLA_B rpkm 0.08 ; HLA_A rpkm 12.86
Note In HLA_DQB1 03:04 , HLA_DQA1 01:02 , HLA_C 01:02 , HLA_DRB1 01:02 , HLA_B 51:10 and 40:01 , HLA_A 02:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Autonomic_ganglia Site Subtype Ns
Primary Histology Neuroblastoma Histology Subtype Ns
Gender Female Age Not Available
Ethnicity Caucasian Tumour Source Metastasis, Bone_marrow
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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