Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Ns, Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma, Ns
Gender Unknown, Male Age Not Available
Ethnicity Asian Tumour Source Ns, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
9604 32213

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,24:02 38:02,51:01 14:02,07:02 05:02,05:02 None 03:02,03:02 14:17,01:01
RPKM HLA_C rpkm 47.03 ; HLA_A rpkm 256.46 ; HLA_B rpkm 27.41 ; HLA_DQA1 rpkm 0.03 ; HLA_DQB1 rpkm 0.05 ; HLA_DRB1 rpkm 0.05
Note In HLA_B 38:02 , HLA_DQA1 05:02 , HLA_DQB1 03:02 , HLA_DRB1 14:17 and 01:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Ns, Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma, Ns
Gender Unknown, Male Age Not Available
Ethnicity Asian Tumour Source Ns, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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