Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Upper_aerodigestive_tract Site Subtype Larynx
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age None
Ethnicity Asian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
207 237

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,02:06 27:05,15:01 04:01,01:02 03:02,01:02 None 05:01,03:02 01:01,04:03
RPKM HLA_B rpkm 322.97 ; HLA_DRB1 rpkm 2.26 ; HLA_DQB1 rpkm 0.36 ; HLA_DQA1 rpkm 0.13 ; HLA_A rpkm 569.59 ; HLA_C rpkm 525.51
Note In HLA_DRB1 04:03 , HLA_DQB1 03:02 , HLA_DQA1 03:02 and 01:02 , HLA_A 02:06. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Upper_aerodigestive_tract Site Subtype Larynx
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Male Age None
Ethnicity Asian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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