Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Biliary_tract Site Subtype Bile_duct
Primary Histology Carcinoma Histology Subtype Ns
Gender Unknown Age None
Ethnicity Asian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
98 115

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
33:03,31:01 48:01,44:03 14:03,03:03 05:02,01:02 None 05:03,02:02 14:05,14:05
RPKM HLA_B rpkm 13.73 ; HLA_A rpkm 48.61 ; HLA_C rpkm 87.16 ; HLA_DQB1 rpkm 0.03 ; HLA_DQA1 rpkm 0.03 ; HLA_DRB1 rpkm 2.05
Note In HLA_B 44:03 , HLA_C 14:03 , HLA_DQB1 05:03 and 02:02 , HLA_DQA1 05:02 and 01:02 , HLA_DRB1 14:05. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Biliary_tract Site Subtype Bile_duct
Primary Histology Carcinoma Histology Subtype Ns
Gender Unknown Age None
Ethnicity Asian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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