Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Liver Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Hepatocellular_carcinoma
Gender Female Age Not Available
Ethnicity Korean, Asian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
303 736

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:06,02:06 35:14,15:27 04:01,03:03 03:02,05:02 None None 12:01,04:06
RPKM HLA_A rpkm 585.24 ; HLA_B rpkm 338.08 ; HLA_DRB1 rpkm 2.05 ; HLA_DQA1 rpkm 0.21 ; HLA_C rpkm 368.81
Note In HLA_A 02:06 , HLA_B 35:14 and 15:27 , HLA_DRB1 12:01 and 04:06 , HLA_DQA1 03:02 and 05:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Liver Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Hepatocellular_carcinoma
Gender Female Age Not Available
Ethnicity Korean, Asian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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