Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Liver Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Hepatocellular_carcinoma
Gender Female Age None
Ethnicity Asian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
119 139

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
33:03,33:03 58:01,58:01 03:02,03:02 None None None 11:04,11:04
RPKM HLA_C rpkm 76.29 ; HLA_B rpkm 63.36 ; HLA_A rpkm 147.99 ; HLA_DRB1 rpkm 0.52
Note In HLA_C 03:02 , HLA_DRB1 11:04. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Liver Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Hepatocellular_carcinoma
Gender Female Age None
Ethnicity Asian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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