Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Lymph_node

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
601 1391

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
24:02,02:01 07:13,37:04 07:04,07:04 None None 05:01,05:01 None
RPKM HLA_A rpkm 134.09 ; HLA_B rpkm 3.56 ; HLA_C rpkm 46.12 ; HLA_DQB1 rpkm 0.25
Note In HLA_A 02:01 , HLA_C 07:04. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Large_intestine Site Subtype Colon
Primary Histology Carcinoma Histology Subtype Adenocarcinoma
Gender Male Age Not Available
Ethnicity Caucasian Tumour Source Primary, Lymph_node
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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