Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Soft_tissue Site Subtype Striated_muscle
Primary Histology Rhabdomyosarcoma Histology Subtype Ns
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
75 87

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
11:01,02:06 35:21,51:01 15:09,04:01 01:02,01:02 None None 13:02,15:66
RPKM HLA_DRB1 rpkm 0.15 ; HLA_B rpkm 24.01 ; HLA_A rpkm 81.07 ; HLA_C rpkm 35.15 ; HLA_DQA1 rpkm 0.08
Note In HLA_DRB1 13:02 , HLA_B 35:21 , HLA_A 02:06 , HLA_C 15:09 , HLA_DQA1 01:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Soft_tissue Site Subtype Striated_muscle
Primary Histology Rhabdomyosarcoma Histology Subtype Ns
Gender Female Age None
Ethnicity Caucasian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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