Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Oesophagus Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns, Squamous_cell_carcinoma
Gender Unknown, Unknown Age Not Available
Ethnicity Asian Tumour Source Ns, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
1001 2449

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:07,11:01 54:01,46:01 01:02,01:02 01:02,01:02 None None None
RPKM HLA_A rpkm 44.54 ; HLA_DQA1 rpkm 0.05 ; HLA_B rpkm 16.09 ; HLA_C rpkm 44.29
Note In HLA_A 02:07 , HLA_DQA1 01:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Oesophagus Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Ns, Squamous_cell_carcinoma
Gender Unknown, Unknown Age Not Available
Ethnicity Asian Tumour Source Ns, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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