Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Stomach Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Adenocarcinoma, Ns
Gender Female Age Not Available
Ethnicity Asian Tumour Source Metastasis, Lymph_node

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
1408 3371

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
26:01,26:01 35:10,35:10 03:03,03:03 05:02,01:02 None None 13:60,13:60
RPKM HLA_DQA1 rpkm 0.06 ; HLA_DRB1 rpkm 0.05 ; HLA_C rpkm 31.05 ; HLA_A rpkm 37.45 ; HLA_B rpkm 1.44
Note In HLA_DQA1 05:02 and 01:02 , HLA_B 35:10. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Stomach Site Subtype Ns
Primary Histology Carcinoma Histology Subtype Adenocarcinoma, Ns
Gender Female Age Not Available
Ethnicity Asian Tumour Source Metastasis, Lymph_node
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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