Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Transitional_cell_carcinoma
Gender Female Age None
Ethnicity African_american Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
192 229

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
01:01,01:01 13:02,07:02 06:02,02:02 None None 06:02,05:02 16:01,15:01
RPKM HLA_C rpkm 365.69 ; HLA_DQB1 rpkm 9.18 ; HLA_B rpkm 293.99 ; HLA_DRB1 rpkm 5.84 ; HLA_A rpkm 286.61
Note In HLA_DQB1 06:02 , HLA_DRB1 16:01 and 15:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Transitional_cell_carcinoma
Gender Female Age None
Ethnicity African_american Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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