Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Unknown, Unknown Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
375 902

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02,32 39,44 05,12 01:03,05:02 04:01,14:01 06:11,03:09 03:02,12:05
RPKM HLA_A rpkm 38.62 ; HLA_DQB1 rpkm nan ; HLA_DQA1 rpkm 0.56 ; HLA_C rpkm 30.08 ; HLA_B rpkm 7.82 ; HLA_DRB1 rpkm nan ; HLA_A rpkm nan ; HLA_DPB1 rpkm nan ; HLA_DQB1 rpkm 0.53 ; HLA_C rpkm nan ; HLA_B rpkm nan ; HLA_DRB1 rpkm 5.92
Note In HLA_A 32:03 , HLA_DQA1 05:02 , HLA_DQB1 06:11 and 03:09 , HLA_DRB1 03:02 and 12:05. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types Not Available
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Unknown, Unknown Age Not Available
Ethnicity Caucasian Tumour Source Primary, Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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