Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Transitional_cell_carcinoma
Gender Male Age None
Ethnicity African_american Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
114 128

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
30:02,36:01 53:01,35:01 04:01,16:01 02:01,02:01 None 06:02,06:02 14:06,15:02
RPKM HLA_DQB1 rpkm 4.06 ; HLA_A rpkm 65.29 ; HLA_DRB1 rpkm 0.24 ; HLA_DQA1 rpkm 0.05 ; HLA_B rpkm 14.15 ; HLA_C rpkm 85.33
Note In HLA_DQB1 06:02 , HLA_A 30:02 , HLA_DRB1 15:02 , HLA_B 35:01 , HLA_C 16:01. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Urinary_tract Site Subtype Bladder
Primary Histology Carcinoma Histology Subtype Transitional_cell_carcinoma
Gender Male Age None
Ethnicity African_american Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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