Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age None
Ethnicity Caucasian Tumour Source Skin

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
299 349

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
02:01,29:02 13:02,44:03 06:02,16:01 None None 04:01,04:01 07:01,11:02
RPKM HLA_DRB1 rpkm 2.83 ; HLA_DQB1 rpkm 0.07 ; HLA_C rpkm 44.5 ; HLA_A rpkm 46.64 ; HLA_B rpkm 17.83
Note In HLA_DRB1 11:02 , HLA_DQB1 04:01 , HLA_A 02:01 and 29:02 , HLA_B 44:03. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Skin Site Subtype Ns
Primary Histology Malignant_melanoma Histology Subtype Ns
Gender Female Age None
Ethnicity Caucasian Tumour Source Skin
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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