Mutant Peptide Lists

Overview

Mutation Count in Gene

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Female Age None
Ethnicity Asian Tumour Source Nan

Mutation Source

COSMIC Cell line COSMIC tissue CCLE PubMed

Mutation Information

Total Genes Total Mutant Peptides
187 223

Overview

HLA Information

HLA Class I HLA Class II
HLA_A HLA_B HLA_C HLA_DQA1 HLA_DPB1 HLA_DQB1 HLA_DRB1
31:01,31:01 40:02,15:01 03:04,03:04 01:02,01:02 None 06:13,02:02 15:01,11:09
RPKM HLA_DRB1 rpkm 0.13 ; HLA_B rpkm 161.26 ; HLA_C rpkm 211.84 ; HLA_A rpkm 274.85 ; HLA_DQB1 rpkm 0.3 ; HLA_DQA1 rpkm 0.54
Note In HLA_DRB1 15:01 , HLA_B 40:02 and 15:01 , HLA_C 03:04 , HLA_DQB1 06:13 and 02:02 , HLA_DQA1 01:02. Ambiguity on 4 digit level. Chosen allele had the highest number of reads.

Sample Information

Sample Type Cell-Line HLA Types None
Primary Site Upper_aerodigestive_tract Site Subtype Mouth
Primary Histology Carcinoma Histology Subtype Squamous_cell_carcinoma
Gender Female Age None
Ethnicity Asian Tumour Source Nan
CAN-IMMUNE ID Gene Symbol Transcript Accession Mutation AA Mutation CDS Mutation Type Source Database Mutant Peptide Source Map ID
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